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catRAPID fragments

catRAPID fragments

This module is based on a procedure which involves division of polypeptide and nucleotide sequences into fragments followed by prediction of their interaction propensities.


Submission reference: 131566

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Protein sequence (FASTA format - min 50 aa)

RNA sequence (FASTA format - min 50 nt)

Fragmentation option

Protein and RNA ("Uniform" fragmentation)
Long RNA ("Weighted" fragmentation)

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Sample data

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FMRP autoregulation - The interaction between the FMR1 protein and its mRNA [Schaeffer et al., 2001]
SRSF1 and Xist RNA - The interaction between SRSF1 and the long noncoding RNA Xist [Royce-Tolland et al., 2010]