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catRAPID omics

catRAPID omics

This module computes the interaction propensities between a protein of interest and the transcriptome in the model organism of choice.



 

Submission reference: 167573


Submission label (optional)



Protein sequence (FASTA format - min 50 aa)



This module accepts text in fasta format. There is another version available that allows submission via file upload.


Which library would you like to analyze?

Caenorhabditis elegans
Danio rerio
Drosophila melanogaster
Homo sapiens
Mus musculus
Rattus norvegicus
Saccharomyces cerevisiae
Xenopus tropicalis
Custom library


Generate or use a pre-existing library (ID number)



Would you like to use nucleic acid binding domains?

No, use full-length protein instead (max 750aa)
Yes


Which type of nucleic acid binding domains would you like to use?

RNA-binding only
RNA- and DNA-binding


Would you like to include disordered regions in your search?

No
Yes


Which part of the transcriptome would you like to interrogate?

Coding
Noncoding


Email address (optional, used for notification)





Submission status:



Sample data

Just trying it out? Pre-populate the form with: (Please, check that you do not have active proxies!)

EZH2 and its RNA interactome - EZH2 protein (full-length) against the mouse transcriptome [Zhao et al., 2010]
TADBP and its RNA interactome - TADBP protein (nucleic-acid-binding domains) against the rat transcriptome [Sephton et al., 2011]