We developed two methods that allow fast and quantitative predictions of protein interactions with large RNAs
- Global Score
- The algorithm has been trained on PAR-/HITS-CLIP (Hafner et al. 2010) and validated on Xist interactions.
- omiXcore
- The algorithm has been calibrated on RBP interactomes studied by eCLIP assays (Van Nostrand et al. 2016) and allows high-throughput predictions on long intergenic non-coding RNAs.