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catRAPID omics

catRAPID omics

This module computes the interaction propensities of a RNA of interest and the nucleotide-binding proteome in the model organism of choice.



 

Submission reference: 821850


Submission label (optional)

RNA sequence (FASTA format - min 50 nt)

This module accepts text in fasta format. There is another version available that allows submission via file upload.


Which library would you like to analyze?

Caenorhabditis elegans
Danio rerio
Drosophila melanogaster
Homo sapiens
Mus musculus
Rattus norvegicus
Saccharomyces cerevisiae
Xenopus tropicalis
Custom library


Generate or use a pre-existing library (ID number)

Would you like to study interactions with nucleic acid binding domains?

No, use full-length proteins instead
Yes


Which type of proteins would you like to interrogate?

RNA-binding only
RNA- and DNA-binding


Would you like to include disordered proteins in your search?

No
Yes


Email address (optional, used for notification)



Submission status:

Send submission



Sample data

Just trying it out? Pre-populate the form with: (Please, check that you do not have active proxies!)

The long noncoding Xist repeat A region - RepA is predicted to bind polycomb group proteins (full length) [Agostini et al., 2012]
CRB3 3'UTR and its protein partners - 3'UTR of CRB3 is recognized by several proteins (RNA-binding domains) [Iioka et al., 2011]