Portal Home

CROSSalign

CROSSalign

CROSSalign predicts the structural similarities of two RNA profiles of different length. The tool is based on CROSS and a Dynamic Time Warping algorithm.



 

Submission reference: 906718


Submission label (optional)

Modes of Dynamic Time Warping (DTW; see the Tutorial/Documentation for the details)

Standard DTW
OBE-DTW
Fragmented OBE-DTW
Dataset (lincRNAs of a specific organism. Ensembl 93, Jul 2018, recent release)
Dataset (lincRNAs of a specific organism. Ensembl 84, Mar 2016, testing set)
Custom Dataset (Upload your sequences for a custom dataset)


Organism (all lincRNAs from Ensembl 93, Jul 2018) recent release

Human
Mouse
Macaque
Rat
Zebrafish


Organism (all lincRNAs from Ensembl 84, Mar 2016) testing set

Human
Mouse
Macaque
Rat
Zebrafish


Email address (optional, used for notification)

RNA Sequence 1 (FASTA format, please ensure that your sequences only contain A, C, G, T, and U. Do not use !@#$% etc.; the minimum required sequence length is 25 nucleotides.)

RNA Sequence 2 or for custom dataset (FASTA format, please ensure that your sequences only contain A, C, G, T, and U. Do not use !@#$% etc.; the minimum required sequence length is 25 nucleotides.)


Submission status:

Send submission