catRAPID omics v2 is a freely accessible web server for the prediction of protein-RNA interaction propensities in a number of model organisms. Three options are available:
- catRAPID omics v2.1 [protein(s) VS transcriptome]
- Interaction prediction module between protein(s) and the precompiled transcriptome of a model organism
- catRAPID omics v2.1 [transcript(s) VS RNA-binding proteome]
- Interaction prediction module between transcript(s) and the precompiled RNA-binding proteome of a model organism
- catRAPID omics v2.1 [custom protein set VS custom transcript set]
- Interaction prediction module between a custom protein set and a custom transcript set.
- catRAPID chemical modifications omics v2.2 [transcript(s) VS RNA-binding proteome]
- Predicts interactions of proteins with chemically modified RNAs
Please, have a look at the documentation and at the tutorial before starting using catRAPID omics version v2.