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Protein-RNA interactions

Protein solubility

Human cells, proteins and RNA - La Xarxa, 10/04/2014

Biomedical publications

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catRAPID relevant publications

Methodology

Livi CM, Klus P, Delli Ponti R, Tartaglia GG. catRAPID signature: identification of ribonucleoproteins and RNA-binding regions
Bioinformatics. 2015. Abstract PDF


Agostini F, Zanzoni A, Klus P, Marchese M, Cirillo D, Tartaglia GG. catRAPID omics: a web server for large-scale prediction of protein-RNA interactions.
Bioinformatics. 2013. Abstract PDF


Bellucci M, Agostini F, Masin M, Tartaglia GG. Predicting protein associations with long noncoding RNAs.
Nat Methods. 2011; 8(6):444-5. Abstract PDF Supplementary

Applications

Agostini F, Cirillo D, Livi CM, Delli Ponti R, Tartaglia GG. ccSOL omics: a webserver for large-scale prediction of endogenous and heterologous solubility in E. coli.
Bioinformatics. 2014. Abstract PDF


Cirillo D, Marchese D, Agostini F, Livi CM, Botta-Orfila MT, Tartaglia GG. Constitutive patterns of gene expression regulated by RNA-binding proteins.
Genome Biology. 2014. Abstract PDF


Zanzoni A, Marchese D, Agostini F, Bolognesi B, Cirillo D, Botta-Orfila MT, Livi CM Rodriguez-Mulero S, Tartaglia GG. Principles of Self-Organization in Biological Pathways: A Hypothesis on the Autogenous Association of Alpha-Synuclein.
Nucleic Acids Res. 2013. Abstract PDF


Cirillo D, Agostini F, Klus P, Marchese D, Rodriguez S, Bolognesi B, Tartaglia GG. Neurodegenerative Diseases: Quantitative Predictions of Protein-RNA Interactions.
RNA 2013. Abstract PDF


Agostini F, Cirillo D, Bolognesi B, Tartaglia GG. X-inactivation: quantitative predictions of protein interactions in the Xist network.
Nucleic Acids Res. 2013. Abstract PDF


Iglesias-Platas I, Martin-Trujillo A, Cirillo D, Court F, Guillaumet-Adkins A, Camprubi C, Bourc'his D, Hata K, Feil R, Tartaglia GG, Arnaud P, Monk D. Characterization of novel paternal ncRNAs at the Plagl1 locus, including Hymai, predicted to interact with regulators of active chromatin.
PLoS One. 2012;7(6):e38907. Abstract PDF

Reviews

Cirillo D, Livi CM, Agostini F, Tartaglia GG. Discovery of Protein-RNA Networks.
Molecular BioSystems. 2014. Abstract PDF


Bolognesi B, Tartaglia GG. Physicochemical principles of protein aggregation.
Prog Mol Biol Transl Sci 2013. Abstract PDF


Johnson R, Noble W, Tartaglia GG, Buckley NJ. Neurodegeneration as an RNA disorder.
Prog Neurobiol. 2012 Dec;99(3):293-315. Abstract PDF


Cirillo D, Agostini F, Tartaglia GG. Predictions of protein–RNA interactions.
WIREs Comput Mol Sci 2012. Abstract PDF